| National Innovation Foundation | gujarat | 16 | |
| National Innovation On Climate Resilient Agriculture | maharashtra | 1 | |
| National Institute for Empowerment of Persons with Multiple Disabilities | tamil nadu | 11 | |
| National Institute for Entrepreneurship and Small Business Development | uttar pradesh | 1 | |
| National Institute for Entrepreneurship And Small Business Development (NIESBUD | uttar pradesh | 4 | |
| National Institute for Interdisciplinary Science and Technology | kerala | 4 | |
| National Institute For Locomotor Disabilities | west bengal | 24 | |
| National Institute For Micro, Small And Medium Enterprises | telangana | 1 | |
| National Institute for Persons with Physical Disabilities (Divyangjan) | delhi | 3 | |
| National Institute For Research In Environmental Health | madhya pradesh | 8 | |
| National Institute for Research in Reproductive Health | maharashtra | 47 | |
| National Institute For Research In Tribal Health | madhya pradesh | 4 | |
| National Institute For Research In Tuberculosis | tamil nadu | 39 | |
| National Institute For Smart Government | andhra pradesh | 1 | |
| National Institute For The Empowerment Of Persons With Intellectual Disabilities (divyangjan) | telangana | 13 | |
| National Institute For The Empowerment Of Persons With Visual Disabilities (divyangjan) | uttarakhand | 4 | |
| National Institute For The Orthoapedically Handicapped | west bengal | 1 | |
| National Institute of Aboitic Stress Management | maharashtra | 1 | |
| National Institute Of Agricultural Extension Management | telangana | 9 | |
| National Institute of Agricultural Marketing | rajasthan | 2 | |
| National Institute of Animal Biotechnology | telangana | 58 | |
| National Institute of Animal Nutrition and Physiology | karnataka | 1 | |
| National Institute of Ayurveda | rajasthan | 9 | |
| National Institute Of Bank Management | maharashtra | 13 | |
| National Institute Of Biologicals | uttar pradesh | 6 | |