| National Institute of Malaria Research | goa | 16 | |
| National Institute of Malaria Research | assam | 12 | |
| National Institute of Malaria Research | jharkhand | 2 | |
| National Institute of Medical Statistics Indian Council of Medical Research | delhi | 4 | |
| National Institute of Mental Health and Neuro Sciences | karnataka | 806 | |
| National Institute Of Miners Health | rajasthan | 7 | |
| National Institute of Nutrition | telangana | 57 | |
| National Institute of Occupational Health | gujarat | 38 | |
| National Institute of Oceanography | goa | 3 | |
| National Institute Of Open Schooling | uttar pradesh | 87 | |
| National Institute Of Pathology | delhi | 2 | |
| National Institute Of Pharmaceutical Education And Research | bihar | 49 | |
| National Institute Of Pharmaceutical Education And Research | assam | 16 | |
| National Institute Of Pharmaceutical Education And Research | punjab | 4 | |
| National Institute Of Pharmaceutical Education And Research | west bengal | 6 | |
| National Institute Of Pharmaceutical Education And Research | telangana | 1 | |
| National Institute Of Pharmaceutical Education And Research | gujarat | 11 | |
| National Institute Of Pharmaceutical Education And Research | uttar pradesh | 39 | |
| National Institute of Plant Genome Research | delhi | 4 | |
| National Institute Of Plant Health Management | telangana | 155 | |
| National Institute Of Plant Health Management | central government | 5 | |
| National Institute Of Public Cooperation And Child Development | karnataka | 2 | |
| National Institute Of Public Cooperation And Child Development | delhi | 145 | |
| National Institute of Public Finance and Policy | delhi | 12 | |
| National Institute of Rock Mechanics | karnataka | 2 | |